Friday, May 8, 2009

Lecture, chapter 13 - Mutation


Child with xeroderma pigmentosum a disorder caused by mutations
on genes involved in DNA repair mechanisms

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Today we finished the chapter on mutation.

We talked about how insertions and deletions (indels) can affect a nucleotidic sequence depending on how many nucleotides are inserted and whether or not they change the reading frame of the sequence.

Then we discussed the basics of the proofreading and DNA repair mechanisms that cells have in place to fix DNA changes, which happen at a much greater rate than the rate of mutation (reminder: a mutation is a DNA change that gets passed to subsequent generations of cells and/or organisms; it's a DNA change that doesn't get repaired).

We also considered a third category of mutations: allelic expansions, which interestingly enough happen in only one of the alleles in a gene pair. Genes that have trinucleotide repeats undergo mutations in which the number of repeats increase to the point in which the protein they encode for is not functional any more.
We mentioned anticipation, the phenomenon in which a genetic disorder caused by an allelic expansion is expressed in a more severe way, and at earlier ages, generation after generation.

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Thursday, May 7, 2009

Lecture, chapter 13 - Intro to cloning and recombinant DNA technology

Today we finished chapter 13, an introduction to the use of recombinant DNA technology.

We talked about how to clone DNA in vitro, through PCR, and how to analyze DNA that has been cloned, mainly with the techniques Southern blotting and automated DNA sequencing.

Tomorrow: We will finish the chapter on mutation (ch 11).

And now, honoring Kyle and Jackie's request, I introduce you to the cheesiest, geekiest, funniest, and learnyousomethingest song: The PCR song...!



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Wednesday, May 6, 2009

Lab 09 - Bioethics debates/presentations

Yesterday, Tuesday May 5, we had our 5 bioethics debates/presentations on the following topics:
  • Prenatal diagnosis or screening
  • Designer babies
  • Genetic privacy
  • Emryonic stem cell research
  • Gene therapy
The style of the presentation portion ranged from a U.S. Senate hearing to a trial (including witnesses, a jury, and even a really ugly bailiff...). Students engaged in relatively gentle, but still interesting debates on different issues. They were able to express their views and opinions, but also showed to be knowledgeable in the topics they decided to research.

On Thursday: More on chapters 11 (mutation) and 13 (intro to cloning and recombinant DNA)

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Monday, May 4, 2009

Lecture, chapter 13 - Cloning and recombinant DNA


A cartoon version of how to ligate DNA into
plasmids as part of the cloning process

click image to see a full size pic
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Today we started covering chapter 13, an introduction to cloning and recombinant DNA technology. We have temporarily skipped the second half of the chapter on mutation, but we will get back to it after finishing the current chapter.

We talked about the definition of cloning, and the basic steps for cloning DNA, including the use of plasmids, YACs, and BACs. We also briefly reviewed the basics of constructing a genomic library and how to probe it when searching for a specific fragment of DNA.

On Thursday: We will talk about in vitro cloning (PCR), southern blots, and automated DNA sequencing.

Tomorrow: Bioethics debates...!!!

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